Publications

  • 2011
  • 2010
  • 2009
  • 2008
  • 2007
  • 2006
  • 2005
  • 2004
  • pre 2004
  1. Pressey JG, Pressey CS, Robinson G, Herring R, Wilson L, Kelly DR, Kim H.
    2D-difference gel electrophoretic proteomic analysis of a cell culture model of alveolar rhabdomyosarcoma.
    J Proteome Res. 2011 Feb 4;10(2):624-36. Epub 2011 Jan 10. [PMID:21110518]

  2. DeAngelis JT, Li Y, Mitchell N, Wilson L, Kim H, Tollefsbol TO.
    2D difference gel electrophoresis analysis of different time points during the course of neoplastic transformation of human mammary epithelial cells.
    J Proteome Res. 2011 Feb 4;10(2):447-58. [PMID:21105747]

  1. Pressey JG, Pressey CS, Robinson G, Herring R, Wilson LB, Kelly DR, Kim H.
    2D-Difference Gel Electrophoretic Proteomic Analysis of a Cell Culture Model of Alveolar Rhabdomyosarcoma.
    J Proteome Res. 2010 Nov 29. [Epub ahead of print] [PMID: 21110518] [DOI: 10.1021/pr1008493]

  2. Deangelis JT, Li Y, Mitchell N, Wilson L, Kim H, Tollefsbol T.
    2D Difference Gel Electrophoresis Analysis of Different Time Points During the Course of Neoplastic Transformation of Human Mammary Epithelial Cells.
    J Proteome Res. 2010 Nov 24. [Epub ahead of print] [PMID: 21105747] [DOI: 10.1021/pr100533k]

  3. Barnes S, Kim H.
    Cautions and research needs identified at the equol, soy, and menopause research leadership conference.
    J Nutr. 2010 Jul;140(7):1390S-4S. [PMID: 20505015]

  4. Kim, Helen.
    Proteomics and Mass Spectrometry approaches in the study of actions of dietary bioactive phytochemicals.
    INVITED BOOK EDITORSHIP for Methods in Molecular Biology series, John Walker, ed. Humana Press, slated for 2010.

  1. Prasain JK, Peng N, Dai Y, Moore R, Arabshahi A, Wilson L, Barnes S, Michael Wyss J, Kim H, Watts RL.
    Liquid chromatography tandem mass spectrometry identification of proanthocyanidins in rat plasma after oral administration of grape seed extract.
    Phytomedicine. 16(2-3):233-43, 2009.

  2. Weaver CM, Barnes S, Wyss JM, Kim H, Morré DM, Morré DJ, Simon JE, Lila MA, Janle EM, Ferruzzi MG.
    Research Highlights from the Purdue-UAB Botanicals Research Center for Age Related Diseases.
    Pharm Biol. 2009 47(8):768-773. [PMID: 19890436] [DOI: 10.1080/13880200902988603]

  3. Kim, Helen.
    Mass Spectrometry for non-mass spectroscopists.
    INVITED BOOK EDITORSHIP for Methods in Molecular Biology series, John Walker, ed. Humana Press., Slated for 2009.

  1. Weaver, C.M., Barnes, S., Wyss, J.M., Kim, H., Morré, D.M., Morré, D.J., Simon, J.E., Lila, M.A., Janle, E.M., Ferruzzi, M.G..
    Botanicals for age-related diseases: from field to practice.
    American Journal of Clinical Nutrition, 87(2):493S-7S, 2008.

  2. Sarkar P, Sarkar S, Ramesh V, Kim H, Barnes S., Kulkarni A, Hall JC, Wilson BL, Thomas RL, Pellis NR, Ramesh GT.
    Proteomic Analysis of Mouse Hypothalamus under Simulated Microgravity.
    Neurochem Res. 33(11):2335-41, 2008.

  3. Kim, H., Cope, M., Herring, R., Robinson, G., Wilson, L., Page, G.P., Barnes, S.
    2D Difference Gel Electrophoresis of Prepubertal and Pubertal Rat Mammary Gland Proteomes.
    Journal of Proteome Research, 7 (11): 4638-4650, 2008.

  4. Barnes, S., Shonsey, E.M., Eliuk, S.M., Stella, D., Mafia, K., Kim, H., Srivastava, O.P., Renfrow, M.B.
    High-resolution mass spectrometry and inactivation of protein targets during oxidant stress.
    Biochemical Society Transactions, 36:1037-44, 2008.

  1. Zhang, H-G., Kim, H., Liu, C., Yu, S., Wang, J, Zhang, L., Grizzle, W.E., Kimberly, R.P., and Barnes, S.
    Curcumin reverses breast tumor exosomes mediated immune suppression of NK cell tumor cytotoxicity.
    Biochimica et Biophysica Acta, 1773: 1116-1123, 2007.

  2. Kim H, Eliuk S, Deshane J, Meleth S, Sanderson T, Pinner A, Robinson G, Wilson L, Kirk M, Barnes S.
    2D gel proteomics: an approach to study age-related differences in protein abundance or isoform complexity in biological samples.
    Methods in Molecular Biology 371:349-391, 2007.

  3. Shannon M. Eliuk, Matthew B. Renfrow, Erin M. Shonsey, Stephen Barnes, and Helen Kim.
    Active Site Modifications of the Brain Isoform of Creatine Kinase by 4-Hydroxy-2-nonenal Correlate with Reduced Enzyme Activity: Mapping of Modified Sites by Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry .
    Chemical Research in Toxicology, 20:1260-1268, 2007.

  4. Goldstein RF, Niraj A, Sanderson TP, Wilson LS, Rab A, Kim H, Bebok Z, Collawn JF.
    VCP/p97 AAA-ATPase Does not Interact with the Endogenous Wild-Type CFTR.
    Am J Respir Cell Mol Biol. 36(6):706-14, 2007

  1. Helen Kim, Jessy Deshane, Stephen Barnes, Sreelatha Meleth
    Proteomics analysis of the actions of grape seed extract in rat brain: technological and biological implications for the study of the actions of psychoactive compounds.
    Life Sciences 78: 2060-2065, 2006

  2. Poonam Sarkar, Shubhashish Sarkar, Vani Ramesh, Barbara E. Hayes, Renard L. Thomas, Bobby L. Wilson, Helen Kim, Stephen Barnes, Anil Kulkarni, Neal Pellis, and Govindarajan T. Ramesh
    Proteomic Analysis of Mice Hippocampus in Simulated Microgravity Environment
    Journal of Proteome Research, 5, 548-553, 2006.

  3. Li L, Cao D, Kim H, Lester R, Fukuchi K.
    Simvastatin enhances learning and memory independent of amyloid load in mice.
    Ann Neurol. 60(6):729-39, 2006.

  4. Hsu HC, Zhou T, Kim H, Barnes S, Yang P, Wu Q, Zhou J, Freeman BA, Luo M, Mountz JD.
    Production of a novel class of polyreactive pathogenic autoantibodies in BXD2 mice causes glomerulonephritis and arthritis.
    Arthritis Rheum. 54(1):343-55, 2006.

  5. Cao D, Fukuchi K, Wan H, Kim H, Li L.
    Lack of LDL receptor aggravates learning deficits and amyloid deposits in Alzheimer transgenic mice.
    Neurobiol Aging. 27(11):1632-43, 2006.

  6. Fukuchi K, Tahara K, Kim HD, Maxwell JA, Lewis TL, Accavitti-Loper MA, Kim H, Ponnazhagan S, Lalonde R.
    Anti-Abeta single-chain antibody delivery via adeno-associated virus for treatment of Alzheimer's disease.
    Neurobiol Dis. 23(3):502-11, 2006.

  7. Helen Kim, Shannon Eliuk, and Jessy Deshane, Stephen Barnes, Sreelatha Meleth
    Nutriproteomics Approach to Understanding Dementia-Relevant Brain Protein Changes in Response to Grape Seed Extract, a Dietary Antioxidant
    Oxidative Stress and Age-Related Neurodegeneration edited by Yuan Luo
    CRC Press, 2006, Chapter 26, ISBN: 0849337259

  1. Helen Kim
    New Nutrition, Proteomics, and How Both Can Enhance Studies in Cancer Prevention and Therapy
    American Society for Nutrition J. Nutr. 135:2715-2718, November 2005

  2. Huang, C.M., Elmets, C.A., van Kampen, K.R., DeSilva, T.S., Barnes, S., Kim, H., and Tang, D.C.
    Prospective highlights of functional skin proteomics.
    Mass Spectrometry Reviews, 24, 647-660, 2005.

  3. Peng N, Clark JT, Prasain J, Kim H, White CR, Wyss JM.
    Antihypertensive and cognitive effects of grape polyphenols in estrogen-depleted, female, spontaneously hypertensive rats.
    Am J Physiol Regul Integr Comp Physiol. 289(3):R771-5, 2005.

  4. Meleth S, Deshane J, Kim H.
    The case for well-conducted experiments to validate statistical protocols for 2D gels: different pre-processing = different lists of significant proteins.
    BMC Biotechnol. 5:7, 2005.

  5. Helen Kim, Shannon Eliuk, and Jessy Deshane, Stephen Barnes, Sreelatha Meleth
    Nutriproteomics Approach to Understanding Dementia-Relevant Brain Protein Changes in Response to Grape Seed Extract, a Dietary Antioxidant
    Oxidative Stress and Age-Related Neurodegeneration edited by Yuan Luo
    CRC Press, 2005, Chapter 26, ISBN: 0849337259

  1. Kim H, Page GP, Barnes S.
    Proteomics and mass spectrometry in nutrition research.
    Nutrition. 20(1):155-65, 2004.

  2. Jessy Deshane, Lisa Chaves, Kiran Varma Sarikonda, Scott Isbell, Landon Wilson, Marion Kirk, Clinton Grubbs, Stephen Barnes, Sreelatha Meleth, Helen Kim
    Proteomics Analysis of Rat Brain Protein Modulations by Grape Seed Extract
    J. Agric. Food Chem. 52, 7872-7883, 2004.

  3. Kim H, Hall P, Smith M, Kirk M, Prasain JK, Barnes S, Grubbs C.
    Chemoprevention by grape seed extract and genistein in carcinogen-induced mammary cancer in rats is diet dependent.
    Nutr. 134(12 Suppl):3445S-3452S, 2004.

  4. Kim HD, Kong FK, Cao Y, Lewis TL, Kim H, Tang DC, Fukuchi K.
    Immunization of Alzheimer model mice with adenovirus vectors encoding amyloid beta-protein and GM-CSF reduces amyloid load in the brain.
    Neurosci Lett. 370(2-3):218-23, 2004.

  5. Venkatraman A, Landar A, Davis AJ, Chamlee L, Sanderson T, Kim H, Page G, Pompilius M, Ballinger S, Darley-Usmar V, Bailey SM.
    Modification of the mitochondrial proteome in response to the stress of ethanol-dependent hepatotoxicity.
    J Biol Chem. 279(21):22092-101, 2004.

  6. Barnes S, Kim H.
    Nutriproteomics: identifying the molecular targets of nutritive and non-nutritive components of the diet.
    J Biochem Mol Biol. 37(1):59-74, 2004.

  7. Aparna Venkatraman, Aimee Landar, Ashley J. Davis, Laura Chamlee, Todd Sanderson, Helen Kim, Grier Page, Melissa Pompilius, Scott Ballinger, Victor Darley-Usmar, and Shannon M. Bailey.
    Modification of the Mitochondrial Proteome in Response to the Stress of Ethanol-dependent Hepatotoxicity.
    The Journal of Biological Chemistry, 279: 22092-22101,2004.

  1. Belenky M, Prasain J, Kim H, Barnes S.
    DING, a genistein target in human breast cancer: a protein without a gene.
    J Nutr. 133(7 Suppl):2497S-2501S, 2003.

  2. Hill A, Kim H.
    The UAB Proteomics Database
    Bioinformatics. 2003 Nov 1;19(16):2149-51.

  3. Paul S. Brookes, Anita Pinner, Anup Ramachandran, Lori Coward, Stephen Barnes, Helen Kim, Victor M. Darley-Usmar.
    High throughput two-dimensional blue-native electrophoresis: A tool for functional proteomics of mitochondria and signaling complexes.
    Proteomics 2002, 2, 969-977

  4. Kim, H., Chaves, L., Mills, R., Oh, J-Y., DeSilva T., Coward, L., Kirk, M. and Barnes, S.
    Effects of soy on proteins implicated in dementias and other neurodegenerative conditions: the use of proteomics technology to assess protein changes.
    In: Soy and Health, 2002: Clinical Evidence and Dietetic Applications, Ed. Descheemaeker, K., Debruyne, I., Garant Publishers, Antwerp-Apeldoorn, pp 155-166, 2002.

  5. Brookes, P.S., Pinner, A., Ramachandran, A., Coward, L., Barnes, S, Kim, H., Darley-Usmar, V.M..
    High throughput two-dimensional blue-native electrophoresis: A tool for functional proteomics of mitochondria and signaling complexes.
    Proteomics 2, 969-977, 2002.

  6. Kim H, Xu J, Su Y, Xia H, Li L, Peterson G, Murphy-Ullrich J, Barnes S
    Actions of the soy phytoestrogen genistein in models of human chronic disease: potential involvement of transforming growth factor beta.
    Biochem Soc Trans. 29(Pt 2):216-22, 2001.

  7. Boersma, B., S. Barnes, M. Kirk, C-C. Wang, M. Smith, H. Kim, J. Xu, R. Patel and V.M. Darley-Usmar.
    Soy isoflavonoids and cancer - metabolism at the target site.
    Mutation Research, 480: 121-127, 2001.

  8. Novak, J., Coward, L., DeSilva, T., Kirk, M., Novak, L., Vu, H.L., Cook, W.J., Kim, H., Barnes, S., Julian, B.A., Mestecky, J., Tomana, M.
    Galactose (Gal)-deficient IgA1-containing circulatory immune complexes from IgA nephropathy (IgAN) patients bind to cultured human mesangial cells and induce cell activation.
    American Society of Nephrology, 33rd Annual Meeting, World Congress of Nephrology, San Francisco, CA, October 13-17, 2001.

  9. Barnes S, Kim H, Darley-Usmar V, Patel R, Xu J, Boersma B, Luo M.
    Beyond ERalpha and ERbeta: estrogen receptor binding is only part of the isoflavone story.
    J Nutr. 130(3):656S-7S, 2000. (Review)

  10. Kim H, Peterson TG, Barnes S.
    Mechanisms of action of the soy isoflavone genistein: emerging role for its effects via transforming growth factor beta signaling pathways.
    Am J Clin Nutr. 68(6 Suppl):1418S-1425S, 1998. (Review)

  11. Kim H.
    Depletion of acetylated alpha-tubulin during microtubule purification from bovine brain gray and white matter regions.
    J Neurosci Res. 30(1):172-82, 1991.

  12. Kim SJ, Kim H, Pillion DJ.
    Insulin-sensitive myelin basic protein phosphorylation on tyrosine residues
    Biochem Biophys Res Commun. 179(1):392-400, 1991.

  13. Kaplan GC, Pillion DJ, Rutter WJ, Kim H, Barker PE.
    Insulin receptor overexpression in a human pre-B acute lymphocytic leukemia cell line with a t(1;19) chromosome translocation near the INSR locus.
    Biochem Biophys Res Commun. 159(3):1275-82, 1989.