Web Sites of Interest

Databases at NIH:
www.ncbi.nlm.nih.gov/gquery/gquery.fcgi 

DNA sequence analysis software and Primer design software: 
www.broad.mit.edu/tools/software.html
http://serialbasics.free.fr/Serial_Cloner.html

Molecular Biology Databases: 
http://restools.sdsc.edu/ 
http://www.public.iastate.edu/~pedro/research_tools.html 
http://www.sbg.bio.ic.ac.uk/3dpssm/ 
http://www.exonhit.com/alternativesplicing/pages/analysis_tools/3/index.htm
http://elegans.swmed.edu/

Optogenetic Resources
Deisseroth Lab: http://web.stanford.edu/group/dlab/optogenetics/ 
Boyden Lab: http://syntheticneurobiology.org/protocols  
Addgene https://www.addgene.org/

Introductory webinar on optogenetics at Science journal website provides a very good introduction into optogenetics: http://webinar.sciencemag.org/webinar/archive/advances-neurotechniques

Protein Interactions Databases
The human proteome organization (HUPO) sets standards for proteomics research to better understand human diseases: http://www.hupo.org/  

Plot protein interaction networks and search for protein interactions by using the Cytoscape software from the Institute for Systems Biology: http://www.systemsbiology.org/  

Protein Interaction datasets are curated monthly at the Biogrid organization that curates 144,660 interactors.  Osprey can be downloaded from this site to make protein interaction networks: http://www.thebiogrid.org/  

Search for protein interactions at the UCLA curated Database of Interacting Proteins (DIP): http://dip.doe-mbi.ucla.edu/  

Search for interactomes at this data base of Human Protein Interaction Database: http://wilab.inha.ac.kr/hpid/  

The Molecular Interaction database (MINT) curates protein interactions for you by literature searches: http://mint.bio.uniroma2.it/mint/Welcome.do  

The Munich Information center for protein sequences supports protein interaction searches: http://mips.gsf.de/proj/ppi/  

Find protein interaction maps for Drosophila and yeast two hybrid protocols at the Finley Lab web site: http://proteome.wayne.edu/finlabindex.html  

The microbial protein interaction database is brought to you by the J. Craig Venter Institute: http://www.jcvi.org/mpidb/about.php  

Signaling pathways and protein interactions are the forte of the protein lounge: http://www.proteinlounge.com/inter_home.asp  

The Human Cancer Protein Interaction Network: http://nesg.org:9090/HCPIN/index.jsp  

The HIV-1 protein interaction network is characterized by NIH at the following web site: http://www.ncbi.nlm.nih.gov/RefSeq/HIVInteractions/index.html

Search for antibody suppliers at the following web sites: 
Search for antibodies and find staining patterns for proteins of interest at the Human Protein Atlas website.  
http://www.proteinatlas.org/ 
http://www.biocompare.com/matrixsc/3194/2/6/18998/T7.html 
http://www.antibodyresource.com/onlinecomp.html

Search for Lentiviral, AAV and CrispR/Cas9 Plasmids at the following web sites:
Lentiviral and AAV expression plasmids for gene expression or repression can be found at many companies including:
Addgene https://www.addgene.org/
Clontech http://www.clontech.com/
Cell Biolabs http://www.cellbiolabs.com/
Life Technologies https://www.lifetechnologies.com/us/en/home.html

Brain Atlas Databases
http://www.brainatlas.org/aba/
http://www.msu.edu/~brains/brains/human/index.html
http://www.brainexplorer.org/brain_atlas/Brainatlas_index.shtml
http://www.pbs.org/wnet/brain/3d/index.html 
http://brainmaps.org/