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Advanced special topics course in metabolomics 2017
(GBSC 724)

Course will be held on Mondays, Wednesdays and Fridays 1:30 pm to 3:00 pm in the SHELBY 515


Date Lecturer Topic
Jan 9, Mon S. Barnes Transition from metabolism to metabolomics and targeted/untargeted approaches [PDF File]
Jan 11, Wed S. Barnes The chemistry of the metabolome [PDF File]
Jan 13, Fri S. Barnes Gas- and liquid chromatography-mass spectrometry [PDF File]
Jan 16, Mon   Martin Luther King Holiday
Jan 18, Wed A. Patterson* Extracting the metabolome (fluids, cells and tissues) [PDF File]
Jan 20, Fri C. Petit Fundamentals in NMR and metabolomics [PDF File]
Jan 23, Mon X. Cui Designing a complex –omics experiment [PDF File]
Jan 25, Wed S. Barnes The discovery of trimethylamine N-oxide [PDF File] [Reference 1] [Reference 2]
Jan 27, Fri S. Barnes Examining GC-/LC-MS data with Mzmine 2.21 [PDF File]
Jan 30, Mon S. Barnes Uploading GC-MS and LC-MS data to XCMSonline [PDF File]
Feb 1, Wed P. Benton** Development and developing functions of XCMS [PDF File]
Feb 3, Fri   First exam
Feb 6, Mon S. Barnes Output of XCMS features for univariate analysis [PDF File]
Feb 8, Wed X. Cui Statistical analysis of XCMS data with MetaboAnalyst [PDF File]
Feb 10, Fri S. Barnes Pathway databases [PDF File] [Excel File]
Feb 13, Mon S. Barnes MS-DIAL software for data analysis [PDF File 1] [PDF File 2]
Feb 15, Wed UNC-CH team Processing NMR data [PDF File]
[1. UAB_RFA_Metaboanalyst.csv]
[2. UAB_RFA_Metaboanalyst_D14_NoPools.csv]
[3. UAB_RFA_Metaboanalyst_D14_Vehicle_vs_HighDose.csv]
Feb 17, Fri S. Barnes The metabolomics workbench [PDF File]
Feb 20, Mon   Student presentations
Feb 22, Wed S. Barnes Isotopically labeled precursors to identify pathways [PDF File]
Feb 24, Fri J. Prasain MSMS of small molecules - interpretation [PDF File]
Feb 27, Mon J. Prasain Validating metabolites [PDF File]
Mar 1, Wed S. Barnes Isotopes and pathway dynamics [PDF File]
Mar 3, Fri   Student presentations [Reference 1] [Reference 2]
Mar 6, Mon S. Barnes Mummichog analysis of data [PDF File]
Mar 8, Wed S. Barnes SWATH-MS, Ion Mobility and LC-MS for lipidomics [PDF File]
Mar 10, Fri J. Prasain Lipid maps database [PDF File]
Mar 13, Mon J Kabarowski Lipid imaging-mass spectrometry [PDF File] [PPT File]
Mar15, Wed A. Wende Metabolomics in models of cardiovascular disease [PDF File]
Mar17, Fri J. Prasain Novel prostanoid molecules [PDF File]
Mar 20, Mon H. Wu The microbiome and metabolomics [PDF File]
Mar 22, Wed C. Petit NMR and magic angle spectroscopy [Reference 1] [Reference 2]
Mar 24, Fri S. Barnes In situ lipidomics in the surgical suite [PDF File]
Mar 27,Mon   Student presentations
Mar 29, Wed K. Uppal*** Integrating the metabolome with the genome, transcriptome and proteome
Mar 31, Fri   FINAL exam due

*Dr. Patterson is from Penn St University and will present his material by Skype
** Dr. Benton is from Scripps Res Inst, La Jolla and will present his material by Skype
*** Dr. Uppal is from Emory University and will present his material by Skype