Advanced special topics course in metabolomics 2019
(GBSC 724)

Course Description

Course will be held on Mondays, Wednesdays and Fridays 9-10:30 am in the SHELBY 1015

Tentative Schedule

Date Lecturer Topic
Jan 7, Mon S. Barnes Transition from metabolism to metabolomics and targeted/untargeted approaches [PDF File]
Jan 9, Wed S. Barnes The extraordinary chemistry of the metabolome [PDF File]
Jan 11, Fri H Tiwari Designing a complex metabolomics experiment [PDF File]
Jan 14, Mon J. Prasain Extracting the metabolome (fluids, cells and tissues) [PDF File]
Jan 16, Wed W. Placzek The platform - fundamentals in NMR and metabolomics [PDF File]
Jan 18, Fri S. Barnes The platform - GC- and LC-mass spectrometry [PDF File]
Jan 21, Mon   Martin Luther King Holiday
Jan 23, Wed S. Barnes MZmine hands-on (1) [PDF File]
Jan 25, Fri S. Barnes MZmine hands-on (2) [PDF File]
Jan 28, Mon S. Barnes Uploading GC-MS and LC-MS data to XCMSonline [PDF File]
Jan 30, Wed D. Sharer Targeted metabolomics for congenital disease in children [PDF File]
Feb 1, Fri S. Barnes Evaluating XCMS analysis [PDF File]
Feb 4, Mon No class Gordon Metabolomics conference
Feb 6, Wed W. Placzek Processing NMR data [PDF File]
Feb 8, Fri No class Gordon Metabolomics conference
Feb 11, Mon S. Barnes Output of XCMS features for univariate analysis [PDF File]
Feb 13, Wed S. Barnes Statistical analysis of XCMS data with MetaboAnalyst [PDF File]
Feb 15, Fri S. Barnes The TMAO story and follow up [PDF File] [Reference 1] [Refernce 2]
Feb 18, Mon S. Barnes Pathway databases [PDF File]
Feb 20, Wed S. Barnes The metabolomics workbench
Feb 22, Fri S. Barnes MS-DIAL software for data analysis
Feb 25, Mon   Student presentations
Feb 27, Wed J. Prasain MSMS of small molecules - interpretation [PDF File]
Mar 1, Fri J. Prasain Validating metabolites [PDF File]
Mar 4, Mon S. Barnes Mummichog analysis of data [Video] [PDF file]
Mar 6, Wed C. Beecher* Isotopic approaches to identify metabolites [Video]
Mar 8, Fri   Student presentations
Mar 11, Mon S. Barnes Isotopes and pathway dynamics [PDF file]
Mar 13, Wed J. Prasain Advanced methods: SWATH-MS, Ion Mobility and LC-MS for lipidomics
[PDF file]
Mar 15, Fri J. Prasain Lipid maps database [PDF file]
Mar 18, Mon J Kabarowski Lipid imaging-mass spectrometry [Reference]
Mar 20, Wed J. Prasain Novel prostanoid molecules [PDF file]
Mar 22, Fri M. Stoll Metabolomics in pediatric arthritis [PDF file]
Mar 25, Mon   Student presentations [Referece 1] [Referece 2]
[Material for General Knowledge] [Supporting Information for Reference 2] [Supplementary Material]
Mar 27, Wed K. Uppal** Integrating the metabolome with the genome, transcriptome and proteome [PDF file]
Mar 29, Fri Eika Portero*** Single cell analysis
Apr 1, Mon S. Barnes In situ lipidomics in the surgical suite [PDF file]
Apr 3, Wed N. Garg**** Integrating the microbiome and metabolomics
Apr 5, Fri   FINAL exam due

*IROA Technologies
** Emory University
*** University of Maryland
**** Georgia Institute of Technology