Protein mass spectrometry 2007
(BMG/PHR 744)

Course will be held on Tuesdays and Fridays 9 - 11 am in the McCallum Building, 4th floor conference room (401)


Date Lecturer Topic
Jan 5, Fri S Barnes/H Kim The world of biomolecules. The proteome, proteomics and other -omics and where to start [PDF File]
Jan 9, Tu M. Renfrow Mass spectrometry - gas phase transfer and instrumentation [PDF File]
Jan 12, Fri S Barnes Methods for the identification of proteins: MALDI-TOF of proteins and peptide mass fingerprinting; LC analysis and peptide sequencing
[PDF File]
Jan 16, Tu S Barnes/ Prasain Importance of fragmentation in mass spectrometry; application to proteomics and other -omics [PDF File]
Jan 19, Fri Facility Staff Methods demo - MSMS Interpretation [PDF File]
Jan 23, Tu
Student presentations
Mid-term exam - take-home
Jan 26, Fri R. Orlando (UGA) Connecting proteomics into bioinformatics; MUDPIT and SEQUEST; false discovery rates in complex systems [PDF File]
Jan 30, Tu S Barnes Simplifying the proteome - techniques of protein purification [PDF File]
Feb 2, Fri H Kim Protein separation by electrophoresis and other 2D-methods [PDF File]
Feb 6, Tu S. Meleth Experimental design issues in proteomics [PDF File]
Feb 9, Fri S Barnes/ Prasain Mass spectrometry in qualitative and quantitative burrowing of the proteome and small molecules in biological samples [PDF File 1] [PDF File 2]
Feb 13, Tu
Student presentations
Feb 16, Fri P. Prevelige Mass Spectrometry as a Tool for Studying Protein Structure [PDF File]
Feb 20, Tu S Barnes Enzymology and mass spectrometry [PDF File]
Feb 23, Fri M. Renfrow Analysis of protein-protein interactions by affinity purification and mass spectrometry
Feb 27, Tu C-C. Wang
J. Mobley
Tissue and body fluid proteomics; tissue imaging by mass spectrometry [PDF File]
Mar 2, Fri M. Renfrow Class demo - FT-ICR-MS methodology
Mar 6, Tu   Student presentations
Mar 9, Fri J. Novak
M. Renfrow
Mass spectrometry in glycomics research - Application to IgA nephropathy
[PDF File 1] [PDF File 2]
Mar 13, Tu T. Garrett (U. Fl) Imaging phospholipids and small molecules with MALDI ion trap mass spectrometry
Mar 16, Fri H Kim Use of proteomics and MS methods in the study of the brain proteome and neurodegenerative diseases
Mar 20, Tu   Final exam due