Every Tuesday- Fall Semester
4:00 to 5:00 p.m.
Tinsley Harrison Tower, 144 Vault Room
Instructor: James J. Cimino, M.D.
The Clinical Informatics Journal Club will discuss cutting edge research in the field of clinical informatics, including (but not limited to) clinical information systems, electronic health records, decision support systems, and medical expert systems. The objective is to understand that informatics is not just a field of solutions to be applied to biomedical problems but that it is a hypothesis-driven endeavor in its own right.
Each week, two participants will be discuss papers of their choosing (with approval of the Director) to summarize the work, place them in their historical context, and compare and contrast them to similar work. All participants will critique of the science and implications of the papers.
Article Archives
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2018
December 4
"Scalable and accurate deep learning for electronic health records" | Thi Nguyen, Ph.D. Student
November 27
"WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks" | Bre' Minniefield, Ph.D. Student
"Development and validation of the PEPPER framework (Prenatal Exposure PubMed ParsER) with applications to food additives" | Andrew Clarke, Ph.D. Student
November 13
"Deriving comorbidities from medical records using natural language processing" | Zongliang Yue, Ph.D., Student
"HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports" | Maggi Chen, Ph.D., Student
October 30, 2018
"Extracting psychiatric stressors for suicide from social media using deep learning" | Thi Nguyen, Ph.D. Student
"A tool for discovering drug sensitivity and gene expression associations in cancer cells" | Irushi Dissanayake, D.O. Post-doctoral Fellow
October 23, 2018
"Patient Similarity Networks for Precision Medicine"Patient Similarity Networks for Precision Medicine" | Thi Nguyen, Ph.D. Student
October 16, 2018
"IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples" | Maggi Chen, Ph.D. Student
October 9, 2018
"Identifying Associations between Somatic Mutations and Clinicopathologic Findings in Lung Cancer Pathology Reports" | Andrew Clarke, Ph.D. Student
October 2, 2018
“Prediction of opioid dose in cancer pain patients using genetic profiling: not yet an option with support vector machine learning” |Tim Kinnell-MSTP Student
“Development, Validation, and Dissemination of a Breast Cancer Recurrence Detection and Timing Informatics Algorithm” |Sergey Antipenko-MSTP Student
September 25, 2018
"Implementation of the CDC translational informatics platform" | Bre' Minniefield, Ph.D. Student
September 18, 2018
"MeSHDD: Literature-based drug-drug similarity for drug repositioning" | Zongliang Yue, Ph.D. Student
September 11, 2018
"SMART precision cancer medicine: a FHIR-based app to provide genomic information for point of care" | Irushi Dissanayake, D.O., Postdoctoral Fellow
September 4, 2018
"Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction" | Sergey Antipenko, Ph.D Student
August 28, 2018
"Enhancing Next-Generation Sequencing-Guided Cancer Care Through Cognitive Computing" and "IBM's Watson supercomputer recommended 'unsafe and incorrect' cancer treatments, internal documents show" | Tim Kennell, MSTP Student
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2017
Novemeber 28, 2017 | "Personal Health Records: A Systematic Literature Review"Personal Health Records: A Systematic Literature Review" | Duy Bui, Ph.D., Postdoctoral Fellow
November 14, 2017 | "Physicians' responses to clinical decision support on an intensive care unit--comparison of four different alerting methods." | Eta Berner, Ed.D., Professor, Department of Health Services Administration
October 31, 2017 | "A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations" | Sergey Antipenko, MSTP Student
October 24, 2017 | "Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records" and "Deep learning" | Tim Kennell, MSTP Student
October 17, 2017 | "Deriving comorbidities from medical records using natural language processing." | Duy Bui, Ph.D., Postdoctoral Fellow
October 10, 2017 | "Virtual Reality for Pediatric Sedation: A Randomized Controlled Trial Using Simulation" | Irushi Dissanayake, D.O., Postdoctoral Fellow
October 3, 2017 | "Interface Terminologies: Facilitating Direct Entry of Clinical Data into Electronic Health Record Systems" | Amy Wang, M.D., Assistant Professor of Medicine
September 26, 2017 | "CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record" | Wayne Liang, M.D., Assistant Professor of Pediatrics
September 19, 2017 | "Towards public health decision support: a systematic review of bidirectional communication approaches" | James Cimino, M.D., Director, Informatics Institute
September 12, 2017 | "Systematic review of the effectiveness of health-related behavioral interventions using portable activity sensing devices (PASDs)" | Sergey Antipenko, MSTP Student
September 5, 2017 | "Effects of computerized clinical decision support systems on practitioner performance and patient outcomes: a systematic review." | Irushi Dissanayake, D.O., Postdoctoral Fellow
August 29, 2017 | "Dermatologist-level classification of skin cancer with deep neural networks" and "Comparison of Physician and Computer Diagnostic Accuracy" | Tim Kennell, MSTP Student