Re-usable Pipelines | Center for Clinical and Translational Science

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Omics Processing and Demos

Various re-usable data processing pipelines are available for an assortment of purposes.

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Need assistance?researchdata@uabmc.edu

QWRAP microbiome data analysis pipeline: Read the QWRAP Paper or browse other pipelines and templates from CCTS Informatics at https://gitlab.rc.uab.edu/CCTS-Informatics-Pipelines (Login required).

AGHIpop GWAS pipeline for analyzing data from the Alabama Genomic Health Initiative: Visit https://ubrite.org/aghi/.

Single cell RNAseq data analysis tutorial from Dr. Min Gao: Source code and workshop slides at https://zenodo.org/records/3700066.

Hackathon projects, example notebooks, technology demos: Visit the Gitlab page here: https://gitlab.rc.uab.edu/U-BRITE