Every Tuesday- Fall Semester
4:00 to 5:00 p.m.
Tinsley Harrison Tower, 144 Vault Room
Instructor: James J. Cimino, M.D.

2018 Journal Club Article and Presentations 

December 11

Final Exam

Article Archives


December 4

"Scalable and accurate deep learning for electronic health records" | Thi Nguyen, Ph.D. Student

November 27

"WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks" | Bre' Minniefield, Ph.D. Student

"Development and validation of the PEPPER framework (Prenatal Exposure PubMed ParsER) with applications to food additives" |  Andrew Clarke, Ph.D. Student

November 13 

"Deriving comorbidities from medical records using natural language processing" | Zongliang Yue, Ph.D., Student

"HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports" | Maggi Chen, Ph.D., Student

October 30, 2018

"Extracting psychiatric stressors for suicide from social media using deep learning" | Thi Nguyen, Ph.D. Student

"A tool for discovering drug sensitivity and gene expression associations in cancer cells" | Irushi Dissanayake, D.O. Post-doctoral Fellow

October 23, 2018

"Patient Similarity Networks for Precision Medicine"Patient Similarity Networks for Precision Medicine" | Thi Nguyen, Ph.D. Student

October 16, 2018

"IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples" | Maggi Chen, Ph.D. Student

October 9, 2018

"Identifying Associations between Somatic Mutations and Clinicopathologic Findings in Lung Cancer Pathology Reports" | Andrew Clarke, Ph.D. Student

October 2, 2018

“Prediction of opioid dose in cancer pain patients using genetic profiling: not yet an option with support vector machine learning” |Tim Kinnell-MSTP Student

“Development, Validation, and Dissemination of a Breast Cancer Recurrence Detection and Timing Informatics Algorithm” |Sergey Antipenko-MSTP Student

September 25, 2018

"Implementation of the CDC translational informatics platform" | Bre' Minniefield, Ph.D. Student

September 18, 2018

"MeSHDD: Literature-based drug-drug similarity for drug repositioning" | Zongliang Yue, Ph.D. Student

September 11, 2018

"SMART precision cancer medicine: a FHIR-based app to provide genomic information for point of care" | Irushi Dissanayake, D.O., Postdoctoral Fellow

September 4, 2018

"Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction" | Sergey Antipenko, Ph.D Student 

August 28, 2018

"Enhancing Next-Generation Sequencing-Guided Cancer Care Through Cognitive Computing" and "IBM's Watson supercomputer recommended 'unsafe and incorrect' cancer treatments, internal documents show" | Tim Kennell, MSTP Student


Novemeber 28, 2017 | "Personal Health Records: A Systematic Literature Review"Personal Health Records: A Systematic Literature Review" | Duy Bui, Ph.D., Postdoctoral Fellow

November 14, 2017 | "Physicians' responses to clinical decision support on an intensive care unit--comparison of four different alerting methods." | Eta Berner, Ed.D., Professor, Department of Health Services Administration

October 31, 2017 | "A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations" | Sergey Antipenko, MSTP Student

October 24, 2017 | "Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records" and "Deep learning" | Tim Kennell, MSTP Student

October 17, 2017 | "Deriving comorbidities from medical records using natural language processing." | Duy Bui, Ph.D., Postdoctoral Fellow

October 10, 2017 | "Virtual Reality for Pediatric Sedation: A Randomized Controlled Trial Using Simulation" | Irushi Dissanayake, D.O., Postdoctoral Fellow

October 3, 2017 | "Interface Terminologies: Facilitating Direct Entry of Clinical Data into Electronic Health Record Systems" | Amy Wang, M.D., Assistant Professor of Medicine 

September 26, 2017 | "CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record" | Wayne Liang, M.D., Assistant Professor of Pediatrics 

September 19, 2017 | "Towards public health decision support: a systematic review of bidirectional communication approaches" | James Cimino, M.D., Director, Informatics Institute

September 12, 2017 | "Systematic review of the effectiveness of health-related behavioral interventions using portable activity sensing devices (PASDs)" | Sergey Antipenko, MSTP Student

September 5, 2017 | "Effects of computerized clinical decision support systems on practitioner performance and patient outcomes: a systematic review." | Irushi Dissanayake, D.O., Postdoctoral Fellow

August 29, 2017 | "Dermatologist-level classification of skin cancer with deep neural networks" and "Comparison of Physician and Computer Diagnostic Accuracy" | Tim Kennell, MSTP Student