Every Tuesday- Fall Semester
4:00 to 5:00 p.m.
Tinsley Harrison Tower, 144 Vault Room
Instructor: James J. Cimino, M.D.
2018 Journal Club Article and Presentations
December 11
Final Exam
Article Archives
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2018
December 4
"Scalable and accurate deep learning for electronic health records" | Thi Nguyen, Ph.D. Student
November 27
"WebNetCoffee: a web-based application to identify functionally conserved proteins from Multiple PPI networks" | Bre' Minniefield, Ph.D. Student
"Development and validation of the PEPPER framework (Prenatal Exposure PubMed ParsER) with applications to food additives" | Andrew Clarke, Ph.D. Student
November 13
"Deriving comorbidities from medical records using natural language processing" | Zongliang Yue, Ph.D., Student
"HealthMap: Global Infectious Disease Monitoring through Automated Classification and Visualization of Internet Media Reports" | Maggi Chen, Ph.D., Student
October 30, 2018
"Extracting psychiatric stressors for suicide from social media using deep learning" | Thi Nguyen, Ph.D. Student
"A tool for discovering drug sensitivity and gene expression associations in cancer cells" | Irushi Dissanayake, D.O. Post-doctoral Fellow
October 23, 2018
"Patient Similarity Networks for Precision Medicine"Patient Similarity Networks for Precision Medicine" | Thi Nguyen, Ph.D. Student
October 16, 2018
"IMPACT: a whole-exome sequencing analysis pipeline for integrating molecular profiles with actionable therapeutics in clinical samples" | Maggi Chen, Ph.D. Student
October 9, 2018
"Identifying Associations between Somatic Mutations and Clinicopathologic Findings in Lung Cancer Pathology Reports" | Andrew Clarke, Ph.D. Student
October 2, 2018
“Prediction of opioid dose in cancer pain patients using genetic profiling: not yet an option with support vector machine learning” |Tim Kinnell-MSTP Student
“Development, Validation, and Dissemination of a Breast Cancer Recurrence Detection and Timing Informatics Algorithm” |Sergey Antipenko-MSTP Student
September 25, 2018
"Implementation of the CDC translational informatics platform" | Bre' Minniefield, Ph.D. Student
September 18, 2018
"MeSHDD: Literature-based drug-drug similarity for drug repositioning" | Zongliang Yue, Ph.D. Student
September 11, 2018
"SMART precision cancer medicine: a FHIR-based app to provide genomic information for point of care" | Irushi Dissanayake, D.O., Postdoctoral Fellow
September 4, 2018
"Knowledge boosting: a graph-based integration approach with multi-omics data and genomic knowledge for cancer clinical outcome prediction" | Sergey Antipenko, Ph.D Student
August 28, 2018
"Enhancing Next-Generation Sequencing-Guided Cancer Care Through Cognitive Computing" and "IBM's Watson supercomputer recommended 'unsafe and incorrect' cancer treatments, internal documents show" | Tim Kennell, MSTP Student
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2017
Novemeber 28, 2017 | "Personal Health Records: A Systematic Literature Review"Personal Health Records: A Systematic Literature Review" | Duy Bui, Ph.D., Postdoctoral Fellow
November 14, 2017 | "Physicians' responses to clinical decision support on an intensive care unit--comparison of four different alerting methods." | Eta Berner, Ed.D., Professor, Department of Health Services Administration
October 31, 2017 | "A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations" | Sergey Antipenko, MSTP Student
October 24, 2017 | "Deep Patient: An Unsupervised Representation to Predict the Future of Patients from the Electronic Health Records" and "Deep learning" | Tim Kennell, MSTP Student
October 17, 2017 | "Deriving comorbidities from medical records using natural language processing." | Duy Bui, Ph.D., Postdoctoral Fellow
October 10, 2017 | "Virtual Reality for Pediatric Sedation: A Randomized Controlled Trial Using Simulation" | Irushi Dissanayake, D.O., Postdoctoral Fellow
October 3, 2017 | "Interface Terminologies: Facilitating Direct Entry of Clinical Data into Electronic Health Record Systems" | Amy Wang, M.D., Assistant Professor of Medicine
September 26, 2017 | "CSER and eMERGE: current and potential state of the display of genetic information in the electronic health record" | Wayne Liang, M.D., Assistant Professor of Pediatrics
September 19, 2017 | "Towards public health decision support: a systematic review of bidirectional communication approaches" | James Cimino, M.D., Director, Informatics Institute
September 12, 2017 | "Systematic review of the effectiveness of health-related behavioral interventions using portable activity sensing devices (PASDs)" | Sergey Antipenko, MSTP Student
September 5, 2017 | "Effects of computerized clinical decision support systems on practitioner performance and patient outcomes: a systematic review." | Irushi Dissanayake, D.O., Postdoctoral Fellow
August 29, 2017 | "Dermatologist-level classification of skin cancer with deep neural networks" and "Comparison of Physician and Computer Diagnostic Accuracy" | Tim Kennell, MSTP Student