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The George M. O’Brien Kidney Resource Alliance (OKRA) provides roughly 400 specialized resources, tools, technologies, services, and expertise beyond those typically available in an individual lab or institutional core. If you are interested in requesting any of the resources below, please click the “Request Here” button below. If you have any questions, email us at okrancc@uab.edu:

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Resource Category Resource Name Resource Center Core Name
Project ConsultationAKI study design and planning for imaging studiesIndiana University Intravital core/Molecular Imaging Resource cores
Animal Models/ProceduresAnimal/material transfer Indiana University Intravital core/Molecular Imaging Resource cores
Project ConsultationCKD study design and planning for imaging studiesIndiana University Intravital core/Molecular Imaging Resource cores
Biostatistics/BioinformaticsData analysis and visualizationIndiana University Intravital core/Molecular Imaging Resource cores
Data ProvisioningData transferIndiana University Intravital core/Molecular Imaging Resource cores
Publication SupportGrant AssistanceIndiana University Intravital core/Molecular Imaging Resource cores
Publication SupportManuscript development/publication supportIndiana University Intravital core/Molecular Imaging Resource cores
Methods DevelopmentMethods development in microscopy and molecular imagingIndiana University Intravital core/Molecular Imaging Resource cores
Project ConsultationProject consultation for imaging studiesIndiana University Intravital core/Molecular Imaging Resource cores
Animal Models/ProceduresRodent cisplatin kidney injuryIndiana University Intravital core/Molecular Imaging Resource cores
Animal Models/ProceduresRodent Kidney Ischemia reperfusion injuryIndiana University Intravital core/Molecular Imaging Resource cores
Animal Models/ProceduresRodent NephrectomyIndiana University Intravital core/Molecular Imaging Resource cores
Animal Models/ProceduresRodent sepsis modelsIndiana University Intravital core/Molecular Imaging Resource cores
Training/DevelopmentTraining- Includes Bioinformatics and Digital Image AnalysisIndiana University Intravital core/Molecular Imaging Resource cores
Training/DevelopmentTraining in Intravital microscopy Indiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesCharacterization of transgenic rodents expressing fluorescently tagged proteins in the kidneyIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesFluorescence lifetime imaging of endogenous and exogenous fluorophores in the kidneyIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Apoptosis and necrosisIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Cellular oxidative stressIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Characterization of in vivo fluorescent probe delivery to the kidneyIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Glomerular PermeabilityIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Microvascular flowIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Microvascular permeabilityIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Mitochondrial functionIndiana University Intravital Microscopy Resource Core
Microscopy/Imaging ServicesIntravital Imaging: Proximal tubule endocytosisIndiana University Intravital Microscopy Resource Core
Biostatistics/BioinformaticsData cleaning, filtering and mappingIndiana University Molecular Imaging Resource core
Microscopy/Imaging ServicesLightsheet microscopyIndiana University Molecular Imaging Resource core
Microscopy/Imaging Services3-dimensional confocal tissue cytometry of kidney tissueIndiana University Molecular Imaging Resource Core
Microscopy/Imaging ServicesCODEX multiplexed cytometry of mouse and human kidney tissue, other tissues/organsIndiana University Molecular Imaging Resource Core
Microscopy/Imaging ServicesIn situ sequencing of mouse and human kidney tissue (Xenium)Indiana University Molecular Imaging Resource Core
Microscopy/Imaging ServicesSpatial Transcriptomics of mouse and human kidney tissue (Visium SD, Visium FFPE)Indiana University Molecular Imaging Resource Core
Animal Models/Procedures Comprehensive mouse kidney phenotyping for diet and stress mechanismsJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Humanized mouse diet protocolsJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Immunological manifestations of dietary and social stressors in the kidneyJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Training/DevelopmentKidney Slice Preparation  Johns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Metabolism phenotypingJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Laboratory ServicesMicrobiomeJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Mouse biobank of dietary and social stress modelsJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Project ConsultationStudy design, Basic Science Dietary and Social Stressor LaboratoryJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Biostatistics/BioinformaticsBioinformatic AnalysisJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Germ-free facility consultation useJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Germ-free sample banksJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures GFR measurementsJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Project ConsultationInitial project consultation to select appropriate Basic Science Dietary and Social Stressor Laboratory resourcesJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Training/DevelopmentIsolated Nephron segment Dissection Johns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Isolated Nephron segment Ex Vivo AnalysisJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Kidney Slice PreparationJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Metabolic Cage and Clearance StudiesJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Optical ClearingJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Plasma and Urine Electrolyte Panels Johns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Protocols, training, and service to isolate and characterize kidney immune cells by flow cytometric analysis (FACS)Johns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Small Sample RNAseq in Isolated Nephron SegmentsJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Animal Models/Procedures Telemetric Blood pressure MonitoringJohns Hopkins UniversityBiomedical Resource Core (B-DSSL)
Laboratory ServicesBiomarker measurement - Clinical Chemistry Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesBiomarker measurement - Immunoassays Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesBiorepository support - Processing aliquoting, short- and long-term sample storageJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Biostatistics/BioinformaticsBiostatistical support (including clinical trials, epidemiological cohorts, case-control studies, survey data, and -omics studies)Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Project ConsultationConsultation on design and features of translational studies in the communityJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Dietary assessment services to investigate dietary patterns and biomarkers of dietary intake and food metabolismJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Genomics dataset w/ deep phenotyping Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesHealthy volunteer samples for Reference Range Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Microscopy/Imaging Services Images w/ deep phenotyping Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Project ConsultationInitial project consultation to select appropriate Clinical Science Dietary and Social Stressor Laboratory resourcesJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Kidney Precision Medicine Center of Excellence (KPMCOE)—EMR registryJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Large longitudinal cohort study data from racially and socioeconomically diverse populationsJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Metabolomics dataset w/ deep phenotyping Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesPolymer synthesis for making nanoparticlesJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesProspective remnant sample collection Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Proteomics dataset w/ deep phenotyping Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Data Provisioning Publicly accessible biospecimen repositories and datasets to support or conduct biomarker studies and secondary data analysesJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Laboratory ServicesStored biospecimen samples from completed studies Johns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Project ConsultationStudy design consultation and data and biobanked specimens from studies on behavioral interventions for lifestyle changesJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Project ConsultationStudy design, Clinical Science Dietary and Social Stressor LaboratoryJohns Hopkins UniversityBiomedical Resource Core (C-DSSL)
Publication SupportHopkins Manuscript developmentJohns Hopkins UniversityBiomedical Resources Core
Project Consultation Applications of immunomagnetic cell sorting (LEAPFROG Platform)NU-USCBiomedical Resource Core
Project Consultation Designing in vitro studiesNU-USCBiomedical Resource Core
Project Consultation Designing in vivo studiesNU-USCBiomedical Resource Core
Project Consultation Feasibility assessmentNU-USCBiomedical Resource Core
Laboratory ServicesFluorophore conjugation with DSPE-PEGNU-USCBiomedical Resource Core
Project Consultation Identifying pathway for therapyNU-USCBiomedical Resource Core
Project Consultation Identifying targeting peptidesNU-USCBiomedical Resource Core
Laboratory ServicesIn vitro cell viability evaluation - MTS assay/plate readerNU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Binding Evaluation NU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Binding Evaluation: Confocal MicroscopyNU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Binding Evaluation: Flow CytrometryNU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Efficacy EvaluationNU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Efficacy: Quantification of markers related - qPCRNU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Efficacy: Quantification of proteins related - ELISANU-USCBiomedical Resource Core
Laboratory ServicesIn Vitro Micelles Efficacy: Quantification of proteins related - Western blotNU-USCBiomedical Resource Core
Laboratory ServicesIn vitro studies of micelles with Collecting Duct cells - Cortical collecting duct (M1)NU-USCBiomedical Resource Core
Laboratory ServicesIn vitro studies of micelles with Collecting Duct cells - Cortical collecting duct (Principal cells)NU-USCBiomedical Resource Core
Laboratory ServicesIn vitro studies of micelles with Collecting Duct cells - Inner Medullary NU-USCBiomedical Resource Core
Laboratory ServicesIn vitro studies of micelles with Proximal Tubule cellsNU-USCBiomedical Resource Core
Project Consultation In Vivo Micelles Therapeutic Efficacy : Hematoxylin and Eosin (H&E) ImagingNU-USCBiomedical Resource Core
Laboratory ServicesIn Vivo Micelles Therapeutic Efficacy: Immunohistochemistry (IHC) ImagingNU-USCBiomedical Resource Core
Laboratory ServicesIn Vivo Micelles Therapeutic Efficacy: using Rapid Model NU-USCBiomedical Resource Core
Project Consultation In Vivo Therapeutic Efficacy: NU-USCBiomedical Resource Core
Project Consultation In Vivo Therapeutic Efficacy: GuidanceNU-USCBiomedical Resource Core
Laboratory ServicesIncorporation of conjugated siRNA into micellesNU-USCBiomedical Resource Core
Laboratory ServicesMicelles formationNU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: Morphology - Transmission electron microscopy (TEM)NU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: particles size - Dynamic Light Scattering (DLS) NU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: Polydispersity Index (PDI)- Dynamic Light Scattering (DLS) NU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: RNA incorporation - Gel ElectrophoresisNU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: RNA protection against nucleases - Gel ElectrophoresisNU-USCBiomedical Resource Core
Laboratory ServicesNanocarrier/micelles characterization: zeta potential - Dynamic Light Scattering (DLS) NU-USCBiomedical Resource Core
Project Consultation NW Background searchNU-USCBiomedical Resource Core
Project Consultation NW Grant proposal assistanceNU-USCBiomedical Resource Core
Publication Support NW Manuscript assistanceNU-USCBiomedical Resource Core
Publication Support NW Publication AssistanceNU-USCBiomedical Resource Core
Laboratory ServicesPeptide purificationNU-USCBiomedical Resource Core
Laboratory ServicesPeptide purification: High-Performance Liquid Chromatography (HPLC)NU-USCBiomedical Resource Core
Laboratory ServicesPeptide purification: Matrix-Assisted Laser Desorption/Ionization (MALDI)NU-USCBiomedical Resource Core
Laboratory ServicesPurified peptide conjugation with DSPE-PEG for micelles synthesisNU-USCBiomedical Resource Core
Laboratory ServicesPurified peptide conjugation with DSPE-PEG purification: High-Performance Liquid Chromoatography (HPLC)NU-USCBiomedical Resource Core
Laboratory ServicesPurified peptide conjugation with DSPE-PEG purification: Matrix-Assisted Laser Desorption/Ionization (MALDI)NU-USCBiomedical Resource Core
Laboratory ServicesQuantification of drug encapsulation in nanocarriers by HPLCNU-USCBiomedical Resource Core
Laboratory ServicessiRNA conjugation with DSPE-PEGNU-USCBiomedical Resource Core
Laboratory ServicesApplications and use of magnetic ranking cytometry (LEAPFROG Platform) NU-USCResource Development Core
Methods Development Cell surface target-specific phenotypic screening NU-USCResource Development Core
Biostatistics/Bioinformatics Cell surfaceome lentiviral CRISPR gRNA libraryNU-USCResource Development Core
Laboratory ServicesCell surfaceome library lentiviral prep NU-USCResource Development Core
Laboratory ServicesCell surfaceome library plasmid prep NU-USCResource Development Core
Methods Development Cell surfaceome target detection optimization and characterization (LEAPFROG Platform)NU-USCResource Development Core
Project Consultation Cell-type specific antigen/target selection for magnetic ranking cytometry NU-USCResource Development Core
Animal Models/ProceduresCell-type specific target expression and distribution assessmentNU-USCResource Development Core
Methods Development Injection moulding based microfluidic chip fabriacation (LEAPFROG Platform)NU-USCResource Development Core
Biostatistics/Bioinformatics NGS data analysis (CRISPR gRNA enrichment assessment)NU-USCResource Development Core
Project Consultation Pooled CRISPR editing and phenotypic screening experimental designsNU-USCResource Development Core
Project Consultation Rare-cell isolation/enrichment using the LEAPFROG PlatformNU-USCResource Development Core
Methods Development Target-antibody-magnetic nanoparticles coupling/optimizationNU-USCResource Development Core
Project Consultation Use of Cell Surfaceome lentiviral CRISPR gRNA library NU-USCResource Development Core
Training/DevelopmentUse of injection moulded microfluidic chips for cell sorting (LEAPFROG platform)NU-USCResource Development Core
Laboratory ServicesUse of microfluidc chips for cell sorting (LEAPFROG Platform)NU-USCResource Development Core
Publication SupportAssistance with manuscript development or publication supportUAB-UCSDAll Cores
Laboratory ServicesAKI Biological Sample RepositoryUAB-UCSDClinical Core
Project ConsultationAKI Clinical Study Initiation and ConductUAB-UCSDClinical Core
Project ConsultationAKI Epidemiological Study Initiation and Conduct UAB-UCSDClinical Core
Biostatistics/Bioinformatics AKI Study Analysis and InterpretationUAB-UCSDClinical Core
Project ConsultationAKI Study Planning and DesignUAB-UCSDClinical Core
Biostatistics/BioinformaticsAnalyses of study resultsUAB-UCSDClinical Core
Biostatistics/BioinformaticsAnalysis of pilot dataUAB-UCSDClinical Core
Data Provisioning Big data transformation & pipeline development: Tools for data collection to support clinical research UAB-UCSDClinical Core
Data Provisioning Cloud-based multimodal databases for AKI and critical care nephrology research studies: Sepsis-AKI datasetsUAB-UCSDClinical Core
Project ConsultationData Safety and MonitoringUAB-UCSDClinical Core
Data Provisioning Database developmentUAB-UCSDClinical Core
Methods Development Design of epidemiological, clinical studies or clinical trialsUAB-UCSDClinical Core
Methods Development Forms, manual of operations, and/or instrument developmentUAB-UCSDClinical Core
Biostatistics/BioinformaticsMethodologies and Applications of Artificial Intelligence and Digital Health: AI computing resource UAB-UCSDClinical Core
Biostatistics/BioinformaticsSample size and/or power analysisUAB-UCSDClinical Core
Animal Models/Procedures 5/6th nephrectomy (both steps)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Aorta TXUAB-UCSDPre-Clinical Core
Animal Models/Procedures Automated tail-cuff blood pressure determination (each, 6 days)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Blodd/Urine CollectionUAB-UCSDPre-Clinical Core
Project Consultation Bulk RNA seq UAB-UCSDPre-Clinical Core
Laboratory ServicesBulk RNA seq - from Fastq to analyses UAB-UCSDPre-Clinical Core
Laboratory ServicesBulk RNA seq - sample to analyses UAB-UCSDPre-Clinical Core
Training/DevelopmentBulk RNA seq training (per day)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Cannulation (indwelling with injection port)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Determination of GFR in awake rodentsUAB-UCSDPre-Clinical Core
Animal Models/Procedures FistulaUAB-UCSDPre-Clinical Core
Microscopy/Imaging Services Functional renal imaging (tracer dependent, per hour)UAB-UCSDPre-Clinical Core
Animal Models/Procedures GFR (transcutaneous FITC-sinistrin) in rodentsUAB-UCSDPre-Clinical Core
Microscopy/Imaging Services Image AnalysisUAB-UCSDPre-Clinical Core
Animal Models/Procedures IP InjectionUAB-UCSDPre-Clinical Core
Animal Models/Procedures Kidney ischemia/reperfusion (IRI)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Kidney TXUAB-UCSDPre-Clinical Core
Animal Models/Procedures Laser Capture Microdissection from frozen tissue (~70 pieces individually collected per sample; sample quality and amount appropriate for RNA-Seq or potentially proteomics)UAB-UCSDPre-Clinical Core
Laboratory Services LC-MS/MS Creatinine determination (per test)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Metabolic cage experiments in mice (per animal and week)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Micropuncture for nephron function and TG feedbackUAB-UCSDPre-Clinical Core
Animal Models/Procedures Misc. surgical services involving body wall penetration (per hour)UAB-UCSDPre-Clinical Core
Microscopy/Imaging ServicesNuclear Imaging (3D)UAB-UCSDPre-Clinical Core
Microscopy/Imaging Services Nuclear imaging (Gamma camera, SPECT/CT, PET/CT) (per hour)UAB-UCSDPre-Clinical Core
Microscopy/Imaging Services Optical Imaging (Bioluminescence, Fluorescence) (per hour)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Orthotopic kidney transplantationUAB-UCSDPre-Clinical Core
Animal Models/Procedures Osmotic pump implantUAB-UCSDPre-Clinical Core
Animal Models/Procedures Parabiosis (mice)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Radio-telemetry determination of blood pressureUAB-UCSDPre-Clinical Core
Microscopy/Imaging ServicesStructural and metabolic imaging (preclinical MRI- BOLD)UAB-UCSDPre-Clinical Core
Microscopy/Imaging ServicesStructural and Metabolic Imaging (Pulse Wave Velocity Imaging)UAB-UCSDPre-Clinical Core
Microscopy/Imaging Services Structural and metabolic imaging (US, MRI, microCT) (per hour)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Tail vein injection or venipuncture (per animal)UAB-UCSDPre-Clinical Core
Animal Models/Procedures ThymectomyUAB-UCSDPre-Clinical Core
Animal Models/Procedures Tissue HarvestUAB-UCSDPre-Clinical Core
Animal Models/Procedures Tissue oxygen partial pressure determination in kidneyUAB-UCSDPre-Clinical Core
Training/DevelopmentTraining (per hour/per day)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Unilateral Ureteral ObstructionUAB-UCSDPre-Clinical Core
Laboratory Services Use of a microsurgical workstation (per hour)UAB-UCSDPre-Clinical Core
Animal Models/Procedures Whole kidney clearance/oxygen consumption studiesUAB-UCSDPre-Clinical Core
Methods Development Research Resource Development (https://www.uab.edu/medicine/obriencenter/cores/development-core)UAB-UCSDResource Development Core
Publication SupportConference, meeting abstract preparationUniversity of MichiganAll cores
Publication SupportConference, meeting presentation supportUniversity of MichiganAll cores
Publication SupportGrant support - LOSUniversity of MichiganAll cores
Publication SupportGrant support - WritingUniversity of MichiganAll cores
Publication SupportMichigan Manuscript developmentUniversity of MichiganAll cores
Biostatistics/Bioinformatics CELLxGENE- data extraction serviceUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentCellxGENE trainingUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentGeneral bioinformatic tool training (eg. R)University of MichiganApplied Systems Biology Core
Training/DevelopmentNephroseq trainingUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentTranscript driven data analysis - Bulk RNA sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentTranscript driven data analysis - Molecular pathway analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics TranSMART CProbe - data extraction serviceUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentTranSMART CProbe trainingUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics TranSMART CureGN - data extraction serviceUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentTranSMART CureGN trainingUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentTranSMART NEPTUNE trainingUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Vitessce - data extraction serviceUniversity of MichiganApplied Systems Biology Core
Training/DevelopmentVitessce trainingUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Animal Transcript driven data-mining workflow - Bulk RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Animal Transcript driven data-mining workflow - Molecular pathway analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Animal Transcript driven data-mining workflow - Single cell/single nuc RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Data Provisioning Clinical and molecular interactions in investigators’ data setsUniversity of MichiganApplied Systems Biology Core
Methods Development General data result interpretation and discussion, development of next stepsUniversity of MichiganApplied Systems Biology Core
Methods Development General troubleshootingUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Human Transcript driven data-mining workflow - Bulk RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Human Transcript driven data-mining workflow - Molecular pathway analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Human Transcript driven data-mining workflow - Single cell/single nuc RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Methods Development Initial study design consultation University of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Metabolomics data-mining workflow - Molecular pathway analysis pipelineUniversity of MichiganApplied Systems Biology Core
Methods Development Metabolomics driven analysis workflowUniversity of MichiganApplied Systems Biology Core
Animal Models/Procedures Model systems studies to identify pathways shared cross-speciesUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Multi-scalar data analysis and integration, including cross-species comparisonUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Nephroseq - data extraction serviceUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Protein data-mining workflow - Molecular pathway analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Protein data-mining workflow - proteomics data analysis pipelineUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics Quantitative morphometric analyses of kidney biopsy samplesUniversity of MichiganApplied Systems Biology Core
Project ConsultationShared Data Mining Services - Initial study design consultation University of MichiganApplied Systems Biology Core
Methods Development Spatial metabolomics service (sample process and data analysis)University of MichiganApplied Systems Biology Core
Laboratory ServicesStructured RNA-DNA sequence data integrationUniversity of MichiganApplied Systems Biology Core
Methods Development Transcript driven data-mining workflow - Bulk RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Methods Development Transcript driven data-mining workflow - Single cell/single nuc RNA Sequencing analysis pipelineUniversity of MichiganApplied Systems Biology Core
Methods Development Transcript driven data-mining workflow - Streamlined self-organizing map (SOM) to identify functional subgroupsUniversity of MichiganApplied Systems Biology Core
Methods Development Transcript driven data-mining workflow - Weighted Correlation Network Analysis (WGCNA) to identify co-expressed molecular elements within datasetsUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics TranSMART NEPTUNE- data extraction serviceUniversity of MichiganApplied Systems Biology Core
Biostatistics/Bioinformatics CELLxGENE - access/support University of MichiganData Analytic Services Core
Biostatistics/Bioinformatics Develop generalized workflow for integrative web-based analysisUniversity of MichiganData Analytic Services Core
Biostatistics/Bioinformatics Investigating biomarker association (gene, protein, metabolite level) in clinical existing cohorts through TranSMART instanceUniversity of MichiganData Analytic Services Core
Biostatistics/Bioinformatics Nephroseq - access/support University of MichiganData Analytic Services Core
Biostatistics/Bioinformatics TranSMART CProbe - access/supportUniversity of MichiganData Analytic Services Core
Biostatistics/Bioinformatics TranSMART CureGN - access/supportUniversity of MichiganData Analytic Services Core
Biostatistics/Bioinformatics TranSMART NEPTUNE - access/support University of MichiganData Analytic Services Core
Biostatistics/Bioinformatics Vitessce - access/support University of MichiganData Analytic Services Core
Microscopy/Imaging ServicesHistopathologyUniversity of PittsburghAll Cores
Project ConsultationConsultation for development of new approaches to study the kidney and lower urinary tractUniversity of PittsburghAll Cores
Biostatistics/BioinformaticsData analysis - cellular and whole animal physiological studies, or imaging studiesUniversity of PittsburghAll Cores
Data ProvisioningData provisioningUniversity of PittsburghAll Cores
Publication SupportManuscript developmentUniversity of PittsburghAll Cores
Microscopy/Imaging ServicesCLEM imaging of kidneysUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesConfocal microscopy - Laser scanning confocal microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesConfocal microscopy - Spinning disk confocal microscopy University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesConfocal microscropy - Fluorescent lifetime imagingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesConfocal microscropy - Fluorescent recovery after photobleachingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesConfocal microscropy - Ribbon scanning confocal microscopy for cleared organs/tissuesUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - CLEMUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Freeze fracture microscopy University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Freeze substitutionUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Immuno-Electron microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Negative stainingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Platinum replica electron microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Scanning electron microscopy (field-emission)University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Transmission electron microscopy University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - UltramicrotomyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesElectron Microscopy - Ultrathin cryo EMUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Laboratory ServicesFunctional imaging analyses (e.g., Ca2+ imaging)University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - ImarisUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - Leica LASX University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - MetamorphUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - NIH image/FIJIUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - NIS elementsUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesImage Analysis - PhotoshopUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesiPOL imagingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy - Fluorescent lifetime imagingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy - Fluorescent recovery after photobleachingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy - Incubator microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy - Lattice light sheet microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy - Spinning disk confocal microscopy University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesLive-cell microscopy -MicroinjectionUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesMeso-Spim light sheet microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesMultiphoton microscopy - Fluorescent lifetime imagingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesMultiphoton microscopy - Fluorescent recovery after photobleachingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesMultiphoton microscopy - Intravital imagingUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesMultiphoton microscopy - Multiphoton confocal microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesSEM imaging of fractured kidneysUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesStandard light microscopy - Brightfield, darkfield, epifluorescence, DICUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesStandard light microscopy - Macro (stereo) imaging microscopyUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesSuper-resolution microscopy - AX/NSPARCUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesSuper-resolution microscopy - CRESTUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesSuper-resolution microscopy - STEDUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesSuper-resolution microscopy - STORMUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Training/DevelopmentTraining in live-cell and intravital approaches to study the biology/pathobiology of kidney and bladder tissuesUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Training/DevelopmentTraining in microscope/equipment usageUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Training/DevelopmentTraining in quantitative image analysisUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Training/DevelopmentTraining in sample preparation of kidney and bladder tissues for light and electron microscopic analysisUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Training/DevelopmentTraining in specialized sample preparation to perform labeling and analysis of cleared organs and tissuesUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesTRIF Microscopy - TIRF imaging acquisition and analysisUniversity of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Microscopy/Imaging ServicesWhole slide scanning - brightfield and epifluorescence University of PittsburghKidney Imaging: Developing Novel and Innovative Tools (KIDNIT) Development Core
Animal Models/ProceduresAnimal Handling and Husbandry University of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Blood pressure telemetryUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Mitochondrial / Bioenergetics (Seahorse)University of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Purine metabolomicsUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Injury biomarker assessmentUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Measurement of GFR and RBFUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Metabolic cage studies, urine metabolitesUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Real-time super-resolution ultrasound of kidney microvasculatureUniversity of PittsburghModel Systems Core
Animal Models/Procedures Animal Models - Tissue Harvesting University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: AKI (cecal ligation and puncture)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: AKI (cisplatin nephrotoxicity)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: AKI (gentamicin nephrotoxicity)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: AKI (ischemia-reperfusion injury)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: AKI (sickle cell crisis)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD (chronic angiotensin II infusion)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD (FSGS)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD (genetic models)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD (two kidney one clip hypertension)University of PittsburghModel Systems Core
Animal Models/Procedures Disease Models: CKD (unilateral ureteral obstruction)University of PittsburghModel Systems Core
Animal Models/Procedures Epithelial Models - Mammalian cell culture models (proximal tubule, collecting duct, polarized epithelia)University of PittsburghModel Systems Core
Animal Models/Procedures Epithelial Models - Organoid models to study kidney injuryUniversity of PittsburghModel Systems Core
Animal Models/Procedures Epithelial Models - Organoid models to study kidney physiologyUniversity of PittsburghModel Systems Core
Animal Models/Procedures Epithelial Models - Organoid models to study nephron developmentUniversity of PittsburghModel Systems Core
Laboratory ServicesHPLC-Fl - ATP MetabolomeUniversity of PittsburghModel Systems Core
Laboratory ServicesPurine Metabolome by UPLC-MS/MSUniversity of PittsburghModel Systems Core
Animal Models/Procedures Special Rodent Diets (low and high Na+ and K+)University of PittsburghModel Systems Core
Animal Models/Procedures Yeast Models - Positive genetic selection assaysUniversity of PittsburghModel Systems Core
Animal Models/Procedures Yeast Models - Protein quality control (degradation, ubiquitylation) assaysUniversity of PittsburghModel Systems Core
Animal Models/Procedures Yeast Models - Bioinformatic analysis of genotype-phenotype correlations (TopMed, Clinvar, UK BioBank)University of PittsburghModel Systems Core
Animal Models/Procedures Yeast Models - Computational identification of functional variantsUniversity of PittsburghModel Systems Core
Animal Models/Procedures Yeast Models - Protein trafficking assays (immunofluorescence, density centrifugation)University of PittsburghModel Systems Core
Laboratory ServicesEpithelial transport in Ussing chambersUniversity of PittsburghPhysiology Core
Laboratory ServicesFunctional imaging analyses (e.g., Ca2+ imaging)University of PittsburghPhysiology Core
Laboratory ServicesIn vitro microperfusion of isolated tubules for functional fluorescence assays of single cell functionUniversity of PittsburghPhysiology Core
Laboratory ServicesIn vitro microperfusion of isolated tubules for measurement of transepithelial ion and solute transportUniversity of PittsburghPhysiology Core
Laboratory ServicesIsolation of single nephron segments for immunofluorescence, enzyme assays, RNA and protein isolationUniversity of PittsburghPhysiology Core
Laboratory ServicesIsolation of Xenopus laevis oocytesUniversity of PittsburghPhysiology Core
Training/DevelopmentNephron segment microdissection/isolation and microperfusion training University of PittsburghPhysiology Core
Laboratory ServicesOocyte two-electrode voltage clampUniversity of PittsburghPhysiology Core
Laboratory ServicesPatch-clamp analysesUniversity of PittsburghPhysiology Core
Training/DevelopmentPatch-clamp training University of PittsburghPhysiology Core
Laboratory ServicesQuantification of surface protein expressionUniversity of PittsburghPhysiology Core
Training/DevelopmentTraining on use of microinjectorsUniversity of PittsburghPhysiology Core
Training/DevelopmentTraining on use of micropipette pullers and microforges to craft micropipettes for patch-clamp and in vitro microperfusionUniversity of PittsburghPhysiology Core
Training/DevelopmentTwo-electrode voltage clamp training University of PittsburghPhysiology Core
Training/DevelopmentXenopus laevis technologies training University of PittsburghPhysiology Core
Publication SupportAssistance with manuscript development or publication supportWashUMetabolism Core
Laboratory ServicesBCA Assay for normalization of fatty acid oxidation data WashUMetabolism Core
Biostatistics/BioinformaticsBioinformatics and biostatistical supportWashUMetabolism Core
Laboratory ServicesBranched chain amino acid oxidation in tissue ex vivo using 14C-KIVAWashUMetabolism Core
Laboratory ServicesCell quantification with Biotek Lionheart (to normalize Seahorse data)WashUMetabolism Core
Project ConsultationChoosing the right metabolic assayWashUMetabolism Core
Laboratory ServicesFatty acid oxidation in tissue ex vivo using 3H-palmitateWashUMetabolism Core
Animal Models/ProceduresGeneration of primary cells for Seahorse or stable isotope studiesWashUMetabolism Core
Laboratory ServicesGlucose oxidation in tissue ex vivo using 14C-pyruvateWashUMetabolism Core
Project ConsultationHigh resolution respirometry (Oroboros) WashUMetabolism Core
Project ConsultationMetabolomics and stable isotope flux study- Zoom discussion with Patti lab over experimental designWashUMetabolism Core
Laboratory ServicesPlacement of jugular catheter for administration of stable isotopesWashUMetabolism Core
Laboratory ServicesSeahorse bioflux analyzer (XF24/XF96) to measure glucose oxidation in primary proximal tubule cellsWashUMetabolism Core
Laboratory ServicesSeahorse bioflux analyzer (XF24/XF96) to measure glutamine oxidation in primary proximal tubule cellsWashUMetabolism Core
Laboratory ServicesSeahorse bioflux analyzer (XF24/XF96) to measure glycolysis (i.e. extracellular acidification rate) in primary proximal tubule cellsWashUMetabolism Core
Laboratory ServicesSeahorse bioflux analyzer (XF24/XF96) to measure mitochondrial oxidative respiration in primary proximal tubule cellsWashUMetabolism Core
Laboratory ServicesSeahorse bioflux analyzer (XF24/XF96) to measure palmitate (fatty acid) oxidation in primary proximal tubule cellsWashUMetabolism Core
Laboratory ServicesStable isotope flux studies- proximal tubules: 13C-glucoseWashUMetabolism Core
Laboratory ServicesStable isotope flux studies- proximal tubules: 13C-glutamineWashUMetabolism Core
Laboratory ServicesStable isotope flux studies- proximal tubules: 13C-palmitateWashUMetabolism Core
Biostatistics/BioinformaticsStable isotope flux studies- proximal tubules: 15N-glutamine: data provisioningWashUMetabolism Core
Data ProvisioningStable isotope flux studies- proximal tubules: 15N-glutamine: data provisioningWashUMetabolism Core
Laboratory ServicesStable isotope tracing studies in vivo: 13C-glucoseWashUMetabolism Core
Biostatistics/BioinformaticsStable isotope tracing studies in vivo: 13C-glucose: data provisioningWashUMetabolism Core
Data ProvisioningStable isotope tracing studies in vivo: 13C-glucose: data provisioningWashUMetabolism Core
Laboratory ServicesStable isotope tracing studies in vivo: 13C-glutamineWashUMetabolism Core
Biostatistics/BioinformaticsStable isotope tracing studies in vivo: 13C-glutamine: data provisioningWashUMetabolism Core
Data ProvisioningStable isotope tracing studies in vivo: 13C-glutamine: data provisioningWashUMetabolism Core
Laboratory ServicesStable isotope tracing studies in vivo: 13C-palmitate and 13C-oleateWashUMetabolism Core
Biostatistics/BioinformaticsStable isotope tracing studies in vivo: 13C-palmitate and 13C-oleate: data provisioningWashUMetabolism Core
Data ProvisioningStable isotope tracing studies in vivo: 13C-palmitate and 13C-oleate: data provisioningWashUMetabolism Core
Laboratory ServicesStable isotope tracing studies in vivo: 15N-glutamineWashUMetabolism Core
Animal Models/ProceduresStable isotope tracing studies in vivo: 15N-glutamine: data provisioningWashUMetabolism Core
Laboratory ServicesStable isotope tracing studies in vivo: branched chain amino acidsWashUMetabolism Core
Animal Models/ProceduresStable isotope tracing studies in vivo: branched chain amino acids: data provisioningWashUMetabolism Core
Laboratory ServicesUntargeted metabolomics - lipidsWashUMetabolism Core
Laboratory ServicesUntargeted metabolomics - water solubleWashUMetabolism Core
Laboratory ServicesAnalysis of variant protein trafficking in cultured cellsWashUVariant Validation Core
Laboratory ServicesAnalysis of variant UMOD protein trafficking in cultured cellsWashUVariant Validation Core
Laboratory ServicesAnalysis of VUS in non-COL4A genes through design and implementation of tailored laboratory assaysWashUVariant Validation Core
Animal Models/ProceduresAnalysis of VUS in non-COL4A genes through generation and analysis of gene edited modelsWashUVariant Validation Core
Project ConsultationChoosing an assay for COL4A3 VUS analysisWashUVariant Validation Core
Project ConsultationChoosing an assay for COL4A4 VUS analysisWashUVariant Validation Core
Project ConsultationChoosing an assay for COL4A5 VUS analysisWashUVariant Validation Core
Project ConsultationChoosing an assay for non-COL4A gene VUS analysisWashUVariant Validation Core
Laboratory ServicesCOL4A3 intronic VUS analysis by minigene RNA splicing assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A3 VUS (missense) analysis by N-terminal split nano-Luciferase collagen IV assembly and secretion assays in transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A3 VUS (missense) analysis by split C-terminal nano-Luciferase collagen IV assembly and secretion assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A3 VUS analysis by high resolution quantitative immunofluorescence imaging in paraffin sections of kidney biopsiesWashUVariant Validation Core
Animal Models/ProceduresCOL4A3/A4/A5 VUS analysis in vivo by mouse gene editingWashUVariant Validation Core
Laboratory ServicesCOL4A4 intronic VUS analysis by minigene RNA splicing assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A4 VUS (missense) analysis by N-terminal split nano-Luciferase collagen IV assembly and secretion assays in transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A4 VUS (missense) analysis by split C-terminal nano-Luciferase collagen IV assembly and secretion assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A4 VUS analysis by high resolution quantitative immunofluorescence imaging in paraffin sections of kidney biopsiesWashUVariant Validation Core
Laboratory ServicesCOL4A5 intronic VUS analysis by minigene RNA splicing assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A5 VUS (missense) analysis by N-terminal split nano-Luciferase collagen IV assembly and secretion assays in transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A5 VUS (missense) analysis by split C-terminal nano-Luciferase collagen IV assembly and secretion assays using transfected cellsWashUVariant Validation Core
Laboratory ServicesCOL4A5 VUS analysis by high resolution quantitative immunofluorescence imaging in paraffin sections of kidney biopsiesWashUVariant Validation Core
Methods DevelopmentDesign of assays for other protein trafficking in cultured cellsWashUVariant Validation Core
Laboratory ServicesIntronic non-COL4A gene VUS analysis by minigene RNA splicing assays using transfected cells WashUVariant Validation Core
Training/DevelopmentTraining in the performance of collagen IV heterotrimerization assays using split nanlLuciferase tagged COL4A chains WashUVariant Validation Core

 

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