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Service lines (please contact us via our enquiry form for specifics):

Genomics (Exome and Whole Genome Sequencing data analysis)*

 

Study design, alignment, SNPs, indels, CNVs, structural variants, annotation, visualization, network analysis, variant interpretation and classification.

Transcriptomics (RNA-Seq, miRNA-Seq, single-cell/single-nuclei RNA-Seq, and CITE-Seq data analysis)#

 

Study design, quality and control, alignment, gene-level or transcript level quantification, differentially expressed gene lists, gene set annotation, genome visualization, network analysis. Related applications to 10X Genomics single-cell/single-nuclei RNA-Seq, such as CITE-seq, ATAC-seq, and spatial transcriptomics, are also supported (other cases beyond 10X Genomics can be discussed in a consultation).

Upon request, for single-cell/single-nuclei analysis, the core may develop custom web-based applications to allow users to interactively visualize their data. An example of this may be viewed at: https://day-lab.shinyapps.io/ratlas/ - apps can be hosted locally in OpenStack during development time or external servers (shinyapps.io or AWS).

Integrative analyses

 

Analysis spanning multiple data types including complex interpretation, visualisation, and network analyses. Please fill out our enquiry form providing details on your specific needs so that we can set up a time to discuss them with you.

Long-Term Collaborations

 

Please fill out our enquiry form providing details on long term collaborations and grant activities so that we can set up a time to discuss them with you.

Additional Services

 

Please use our enquiry form to set up some time to discuss other needs you might have such as custom analytical pipelines/algorithm/web-based application development and personalized training needs.

If you have an analytical need which is not listed here, please fill out the enquiry form to have your service need logged in our system. This aids U-BDS in decisions linked to new services that may provided in the future.

 

* These services are currently targeted for humans. Please contact for discussions on analysis for other species.
# These services are currently targeted for humans and common model organisms (e.g.: mice, rats). Please contact for discussions on analysis for other species.